3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00561

Details:

PFam ID : PF00561

PFam Domain Description : alpha/beta hydrolase fold

Number of Sequence in 50% Dataset : 619

Number of Sequence in Full Dataset : 3335

Average sequence length: 243.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00561	C6H9D2_AJECH_313_422	87.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00561	F1L2D1_ASCSU_145_401	94.4

Sequence based PCA Plot of the family - PF00561 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=20
Motif2 Start=56 Length=8
Motif3 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay