3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00558

Details:

PFam ID : PF00558

PFam Domain Description : Vpu protein

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 2564

Average sequence length: 79.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00558	E5RF64_9HIV1_1_26	16.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00558	VPU_SIVCZ_1_88	98.6

Sequence based PCA Plot of the family - PF00558 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay