3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00557

Details:

PFam ID : PF00557

PFam Domain Description : Metallopeptidase family M24

Number of Sequence in 50% Dataset : 522

Number of Sequence in Full Dataset : 6180

Average sequence length: 222.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00557	A8X6A7_CAEBR_181_273	76.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00557	C3JHR6_RHOER_154_236	99.9

Sequence based PCA Plot of the family - PF00557 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=70 Length=8
Motif3 Start=83 Length=17
Motif4 Start=222 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay