3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00556

Details:

PFam ID : PF00556

PFam Domain Description : Antenna complex alpha/beta subunit

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 197

Average sequence length: 38.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00556	B8G4M3_CHLAD_6_39	42.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00556	D3RP98_ALLVD_14_47	52

Sequence based PCA Plot of the family - PF00556 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay