3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00555

Details:

PFam ID : PF00555

PFam Domain Description : delta endotoxin

Number of Sequence in 50% Dataset : 71

Number of Sequence in Full Dataset : 122

Average sequence length: 196.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00555	C27AA_BACUH_311_499	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00555	Q56B08_BACTU_301_523	98.3

Sequence based PCA Plot of the family - PF00555 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=18 Length=8
Motif2 Start=4 Length=8
Motif3 Start=148 Length=8
Motif4 Start=174 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay