3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00553

Details:

PFam ID : PF00553

PFam Domain Description : Cellulose binding domain

Number of Sequence in 50% Dataset : 120

Number of Sequence in Full Dataset : 836

Average sequence length: 96.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00553	D5YQ64_MYCTU_17_81	99.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00553	D4S0I1_9FIRM_106_221	100

Sequence based PCA Plot of the family - PF00553 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=30 Length=8
Motif3 Start=48 Length=11
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay