3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00552

Details:

PFam ID : PF00552

PFam Domain Description : Integrase DNA binding domain

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 206

Average sequence length: 49.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00552	Q8AE82_9HIV1_220_245	70

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00552	Q8AGY0_9RETR_1546_1596	94.6

Sequence based PCA Plot of the family - PF00552 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay