3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00551

Details:

PFam ID : PF00551

PFam Domain Description : Formyl transferase

Number of Sequence in 50% Dataset : 314

Number of Sequence in Full Dataset : 3945

Average sequence length: 173.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00551	A1SU76_PSYIN_3_153	95.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00551	A0LFD2_SYNFM_8_230	99.9

Sequence based PCA Plot of the family - PF00551 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=175 Length=8
Motif2 Start=118 Length=14
Motif3 Start=2 Length=17
Motif4 Start=145 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay