3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00549

Details:

PFam ID : PF00549

PFam Domain Description : CoA-ligase

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 1549

Average sequence length: 123.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00549	D0WIW7_9ACTN_319_483	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00549	D0WIW7_9ACTN_319_483	85

Sequence based PCA Plot of the family - PF00549 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=13 Length=8
Motif2 Start=4 Length=8
Motif3 Start=128 Length=8
Motif4 Start=59 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay