3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00548

Details:

PFam ID : PF00548

PFam Domain Description : 3C cysteine protease (picornain 3C)

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 160

Average sequence length: 149.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00548	A7LM73_9VIRU_2261_2403	95.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00548	B0Z3W9_9PICO_1608_1789	100

Sequence based PCA Plot of the family - PF00548 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=71 Length=8
Motif3 Start=129 Length=8
Motif4 Start=148 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay