3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00547

Details:

PFam ID : PF00547

PFam Domain Description : Urease, gamma subunit

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 395

Average sequence length: 96.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00547	D8USR3_9MICC_1620_1720	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00547	B3T9J7_9ARCH_21_119	99.2

Sequence based PCA Plot of the family - PF00547 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=82 Length=8
Motif3 Start=66 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay