3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00543

Details:

PFam ID : PF00543

PFam Domain Description : Nitrogen regulatory protein P-II

Number of Sequence in 50% Dataset : 88

Number of Sequence in Full Dataset : 1338

Average sequence length: 101.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00543	E7S1Y6_STRAG_1_41	63.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00543	D7JCS6_9BACT_4_97	100

Sequence based PCA Plot of the family - PF00543 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=73 Length=11
Motif3 Start=53 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay