3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00541

Details:

PFam ID : PF00541

PFam Domain Description : Adenoviral fibre protein (knob domain)

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 59

Average sequence length: 171.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00541	FIBP_ADEB3_803_974	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00541	Q8V791_9ADEN_134_320	100

Sequence based PCA Plot of the family - PF00541 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=32 Length=8
Motif2 Start=2 Length=17
Motif3 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay