3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00539

Details:

PFam ID : PF00539

PFam Domain Description : Transactivating regulatory protein (Tat)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 1183

Average sequence length: 64.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00539	F2U0C7_9EUKA_5_71	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00539	B2YFV6_9HIV1_1_25	93.4

Sequence based PCA Plot of the family - PF00539 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay