3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00538

Details:

PFam ID : PF00538

PFam Domain Description : linker histone H1 and H5 family

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 549

Average sequence length: 69.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00538	F2U0C7_9EUKA_5_71	49.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00538	A8CKD2_9CAEN_10_91	100

Sequence based PCA Plot of the family - PF00538 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=17 Length=8
Motif3 Start=73 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay