3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00535

Details:

PFam ID : PF00535

PFam Domain Description : Glycosyl transferase family 2

Number of Sequence in 50% Dataset : 5553

Number of Sequence in Full Dataset : 18462

Average sequence length: 163.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00535	A7AHD4_9PORP_34_195	93.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00535	Q47U93_COLP3_73_191	99.7

Sequence based PCA Plot of the family - PF00535 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=33 Length=8
Motif3 Start=54 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay