3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00534

Details:

PFam ID : PF00534

PFam Domain Description : Glycosyl transferases group 1

Number of Sequence in 50% Dataset : 5710

Number of Sequence in Full Dataset : 18430

Average sequence length: 162.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00534	C0ASE8_9ENTR_1_65	91.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00534	B0SPB8_LEPBP_338_404	99.9

Sequence based PCA Plot of the family - PF00534 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=53 Length=8
Motif2 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay