3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00533

Details:

PFam ID : PF00533

PFam Domain Description : BRCA1 C Terminus (BRCT) domain

Number of Sequence in 50% Dataset : 547

Number of Sequence in Full Dataset : 2787

Average sequence length: 78.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00533	B2W7P6_PYRTR_437_485	80.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00533	C4M9K2_ENTHI_273_348	99.0

Sequence based PCA Plot of the family - PF00533 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=41 Length=8
Motif2 Start=4 Length=30

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay