3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00531

Details:

PFam ID : PF00531

PFam Domain Description : Death domain

Number of Sequence in 50% Dataset : 280

Number of Sequence in Full Dataset : 788

Average sequence length: 80.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00531	A7RGQ1_NEMVE_160_215	98.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00531	F2XX01_9CNID_8_86	99.8

Sequence based PCA Plot of the family - PF00531 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=15 Length=17
Motif2 Start=1 Length=8
Motif3 Start=39 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay