3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00529

Details:

PFam ID : PF00529

PFam Domain Description : HlyD family secretion protein

Number of Sequence in 50% Dataset : 1040

Number of Sequence in Full Dataset : 4167

Average sequence length: 261.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00529	C0B1Y7_9ENTR_42_80	94.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00529	E7K5H2_SHISO_39_151	99.9

Sequence based PCA Plot of the family - PF00529 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=24 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay