3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00528

Details:

PFam ID : PF00528

PFam Domain Description : Binding-protein-dependent transport system inner membrane component

Number of Sequence in 50% Dataset : 3697

Number of Sequence in Full Dataset : 41551

Average sequence length: 196.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00528	C4UCK3_YERAL_1_118	75.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00528	A8LCI5_FRASN_4_79	94.1

Sequence based PCA Plot of the family - PF00528 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=44 Length=8
Motif3 Start=63 Length=32

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay