3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00527

Details:

PFam ID : PF00527

PFam Domain Description : E7 protein, Early protein

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 197

Average sequence length: 88.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00527	Q81886_9PAPI_21_53	97.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00527	C0ITA6_9PAPI_3_107	100

Sequence based PCA Plot of the family - PF00527 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=86 Length=8
Motif2 Start=68 Length=11
Motif3 Start=1 Length=11
Motif4 Start=97 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay