3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00526

Details:

PFam ID : PF00526

PFam Domain Description : Dictyostelium (slime mold) repeat

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 233

Average sequence length: 23.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00526	Q54F27_DICDI_104_122	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00526	Q54F27_DICDI_104_122	80

Sequence based PCA Plot of the family - PF00526 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=11 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay