3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00525

Details:

PFam ID : PF00525

PFam Domain Description : Alpha crystallin A chain, N terminal

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 63

Average sequence length: 52.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00525	Q5QSI5_TALEU_1_17	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00525	E7D1I1_9ARAC_6_57	93.5

Sequence based PCA Plot of the family - PF00525 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=19 Length=30
Motif2 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay