3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00524

Details:

PFam ID : PF00524

PFam Domain Description : E1 Protein, N terminal domain

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 201

Average sequence length: 122.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00524	F2VIQ1_9PAPI_1_131	28.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00524	F2VIQ1_9PAPI_1_131	100

Sequence based PCA Plot of the family - PF00524 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=29 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay