3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00523

Details:

PFam ID : PF00523

PFam Domain Description : Fusion glycoprotein F0

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 166

Average sequence length: 191.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00523	C6KH20_9PARA_1_175	67.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00523	B6UPM9_9PARA_36_529	100

Sequence based PCA Plot of the family - PF00523 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay