3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00522

Details:

PFam ID : PF00522

PFam Domain Description : VPR/VPX protein

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 771

Average sequence length: 89.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00522	Q87481_SIVCZ_23_117	11.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00522	Q9Q0A0_SIVCZ_10_94	100

Sequence based PCA Plot of the family - PF00522 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=11
Motif2 Start=24 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay