3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00521

Details:

PFam ID : PF00521

PFam Domain Description : DNA gyrase/topoisomerase IV, subunit A

Number of Sequence in 50% Dataset : 111

Number of Sequence in Full Dataset : 1957

Average sequence length: 397.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00521	C4YBE9_CLAL4_1_137	58.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00521	D8V0F1_9GAMM_1_168	100

Sequence based PCA Plot of the family - PF00521 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=82 Length=8
Motif2 Start=143 Length=8
Motif3 Start=286 Length=8
Motif4 Start=32 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay