3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00520

Details:

PFam ID : PF00520

PFam Domain Description : Ion transport protein

Number of Sequence in 50% Dataset : 1076

Number of Sequence in Full Dataset : 4455

Average sequence length: 191.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00520	E9IH10_SOLIN_2_75	96.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00520	C1G6S9_PARBD_499_592	91.1

Sequence based PCA Plot of the family - PF00520 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=228 Length=8
Motif2 Start=7 Length=17
Motif3 Start=40 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay