3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00518

Details:

PFam ID : PF00518

PFam Domain Description : Early Protein (E6)

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 194

Average sequence length: 107.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00518	E0YQZ1_9PAPI_63_109	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00518	Q1XA75_9PAPI_6_155	100

Sequence based PCA Plot of the family - PF00518 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=30 Length=17
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay