3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00515

Details:

PFam ID : PF00515

PFam Domain Description : Tetratricopeptide repeat

Number of Sequence in 50% Dataset : 2593

Number of Sequence in Full Dataset : 7863

Average sequence length: 31.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00515	D3DG76_HYDTT_113_146	62.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00515	D2UZS0_NAEGR_547_578	25

Sequence based PCA Plot of the family - PF00515 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=19 Length=14
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay