3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00514

Details:

PFam ID : PF00514

PFam Domain Description : Armadillo/beta-catenin-like repeat

Number of Sequence in 50% Dataset : 154

Number of Sequence in Full Dataset : 2647

Average sequence length: 40.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00514	B8CAQ4_THAPS_319_361	18.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00514	D0NCY9_PHYIT_226_266	97.7

Sequence based PCA Plot of the family - PF00514 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=11 Length=11
Motif2 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay