3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00513

Details:

PFam ID : PF00513

PFam Domain Description : Late Protein L2

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 214

Average sequence length: 468.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00513	A4NYX1_HAEIF_2_103	92.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00513	Q85313_9PAPI_4_208	100

Sequence based PCA Plot of the family - PF00513 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=22 Length=25
Motif3 Start=251 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay