3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00512

Details:

PFam ID : PF00512

PFam Domain Description : His Kinase A (phospho-acceptor) domain

Number of Sequence in 50% Dataset : 1664

Number of Sequence in Full Dataset : 26070

Average sequence length: 68.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00512	Q3IN65_NATPD_1134_1227	97.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00512	A6FKB2_9RHOB_62_119	99.4

Sequence based PCA Plot of the family - PF00512 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=10 Length=17
Motif3 Start=48 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay