3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00511

Details:

PFam ID : PF00511

PFam Domain Description : E2 (early) protein, C terminal

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 205

Average sequence length: 78.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00511	Q1XA73_9PAPI_294_375	91.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00511	Q1XA73_9PAPI_294_375	100

Sequence based PCA Plot of the family - PF00511 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=17
Motif2 Start=61 Length=11
Motif3 Start=7 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay