3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00510

Details:

PFam ID : PF00510

PFam Domain Description : Cytochrome c oxidase subunit III

Number of Sequence in 50% Dataset : 185

Number of Sequence in Full Dataset : 2805

Average sequence length: 206.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00510	D7S9W4_9PLAT_2_81	90.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00510	Q1N2M6_9GAMM_4_92	99.9

Sequence based PCA Plot of the family - PF00510 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=20
Motif2 Start=24 Length=8
Motif3 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay