3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00508

Details:

PFam ID : PF00508

PFam Domain Description : E2 (early) protein, N terminal

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 201

Average sequence length: 198.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00508	O92512_9PAPI_1_123	86.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00508	F2VIQ8_9PAPI_1_205	100

Sequence based PCA Plot of the family - PF00508 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=105 Length=8
Motif2 Start=32 Length=8
Motif3 Start=165 Length=8
Motif4 Start=131 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay