3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00507

Details:

PFam ID : PF00507

PFam Domain Description : NADH-ubiquinone/plastoquinone oxidoreductase, chain 3

Number of Sequence in 50% Dataset : 98

Number of Sequence in Full Dataset : 2821

Average sequence length: 105.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00507	B2YIA0_CHLIS_1_41	84.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00507	C3L424_AMOA5_18_141	100

Sequence based PCA Plot of the family - PF00507 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=8
Motif3 Start=25 Length=32

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay