3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00506

Details:

PFam ID : PF00506

PFam Domain Description : Influenza non-structural protein (NS1)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 21

Average sequence length: 182.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00506	C7FPP5_9INFA_1_29	15.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00506	F1KCE6_9INFA_1_498	100

Sequence based PCA Plot of the family - PF00506 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay