3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00505

Details:

PFam ID : PF00505

PFam Domain Description : HMG (high mobility group) box

Number of Sequence in 50% Dataset : 509

Number of Sequence in Full Dataset : 2040

Average sequence length: 65.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00505	Q4RS34_TETNG_338_381	92.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00505	B3Y9G0_BOVIN_327_386	100

Sequence based PCA Plot of the family - PF00505 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=21
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay