3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00504

Details:

PFam ID : PF00504

PFam Domain Description : Chlorophyll A-B binding protein

Number of Sequence in 50% Dataset : 206

Number of Sequence in Full Dataset : 1261

Average sequence length: 119.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00504	D8U4N5_VOLCA_3_110	96.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00504	D7FPU7_ECTSI_61_256	99.9

Sequence based PCA Plot of the family - PF00504 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=54 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay