3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00503

Details:

PFam ID : PF00503

PFam Domain Description : G-protein alpha subunit

Number of Sequence in 50% Dataset : 228

Number of Sequence in Full Dataset : 853

Average sequence length: 313.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00503	E2LHD8_MONPE_10_229	88.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00503	C4P6P5_9AGAR_192_373	100

Sequence based PCA Plot of the family - PF00503 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=164 Length=19
Motif2 Start=52 Length=11
Motif3 Start=150 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay