3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00501

Details:

PFam ID : PF00501

PFam Domain Description : AMP-binding enzyme

Number of Sequence in 50% Dataset : 5572

Number of Sequence in Full Dataset : 25848

Average sequence length: 361.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00501	D2VRH5_NAEGR_169_618	81.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00501	D3F5B0_CONWI_309_371	99.7

Sequence based PCA Plot of the family - PF00501 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=232 Length=26
Motif2 Start=422 Length=8
Motif3 Start=500 Length=44

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay