3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00500

Details:

PFam ID : PF00500

PFam Domain Description : L1 (late) protein

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 618

Average sequence length: 183.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00500	Q84301_HPV13_1_199	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00500	Q81850_9PAPI_1_128	100

Sequence based PCA Plot of the family - PF00500 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=161 Length=8
Motif2 Start=13 Length=8
Motif3 Start=63 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay