3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00499

Details:

PFam ID : PF00499

PFam Domain Description : NADH-ubiquinone/plastoquinone oxidoreductase chain 6

Number of Sequence in 50% Dataset : 445

Number of Sequence in Full Dataset : 3316

Average sequence length: 151.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00499	E6N9D3_9ARCH_13_82	65.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00499	A6ZGV0_HUMAN_11_171	99.9

Sequence based PCA Plot of the family - PF00499 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=8
Motif2 Start=12 Length=8
Motif3 Start=44 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay