3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00498

Details:

PFam ID : PF00498

PFam Domain Description : FHIPEP family

Number of Sequence in 50% Dataset : 848

Number of Sequence in Full Dataset : 4317

Average sequence length: 70.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00498	Q7SCY3_NEUCR_113_198	89.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00498	A0D1P3_PARTE_285_363	99.5

Sequence based PCA Plot of the family - PF00498 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=70 Length=8
Motif2 Start=18 Length=8
Motif3 Start=45 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay