3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00496

Details:

PFam ID : PF00496

PFam Domain Description : Bacterial extracellular solute-binding proteins, family 5 Middle

Number of Sequence in 50% Dataset : 1977

Number of Sequence in Full Dataset : 7582

Average sequence length: 360.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00496	B3R058_PHYMT_95_473	91.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00496	C5Q3T9_STAAU_1_79	99.9

Sequence based PCA Plot of the family - PF00496 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=16 Length=8
Motif2 Start=28 Length=8
Motif3 Start=86 Length=8
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay