3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00493

Details:

PFam ID : PF00493

PFam Domain Description : MCM2/3/5 family

Number of Sequence in 50% Dataset : 177

Number of Sequence in Full Dataset : 1146

Average sequence length: 272.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00493	A9P972_POPTR_1_34	54.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00493	D7FQ67_ECTSI_602_675	100

Sequence based PCA Plot of the family - PF00493 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=114 Length=8
Motif2 Start=429 Length=8
Motif3 Start=401 Length=22

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay