3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00491

Details:

PFam ID : PF00491

PFam Domain Description : Arginase family

Number of Sequence in 50% Dataset : 378

Number of Sequence in Full Dataset : 1985

Average sequence length: 265.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00491	Q9UZ83_PYRAB_43_230	89.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00491	A6RCD5_AJECN_28_92	99.8

Sequence based PCA Plot of the family - PF00491 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=81 Length=8
Motif2 Start=21 Length=18
Motif3 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay