3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00490

Details:

PFam ID : PF00490

PFam Domain Description : Delta-aminolevulinic acid dehydratase

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 1051

Average sequence length: 310.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00490	D0NMW5_PHYIT_3_324	92.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00490	B9EPV2_SALSA_5_78	100

Sequence based PCA Plot of the family - PF00490 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=222 Length=8
Motif2 Start=277 Length=11
Motif3 Start=8 Length=8
Motif4 Start=241 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay